Science 2008,320(5881):1344–1349.PubMedCrossRef 18. Willenbrock H, Salomon J, Sokilde R, Barken KB, Hansen TN, Nielsen FC, Moller S, Litman T: Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing. RNA 2009,15(11):2028–2034.PubMedCrossRef 19. Bullard JH, Purdom E, Hansen KD, Dudoit S: Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics
2010, 11:94.PubMedCrossRef 20. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B: Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008,5(7):621–628.PubMedCrossRef 21. Wada A, Mikkola R, Kurland CG, Ishihama A: Growth Phase-Coupled NVP-BSK805 Changes of the Ribosome Profile in Natural Isolates and Laboratory Strains of Escherichia coli. J Bacteriol 2000,182(10):2893–2899.PubMedCrossRef 22. Stewart FJ, Ottesen EA, DeLong EF: Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics. ISME J 2010. 23. Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu Y, Denoeud F, Antonarakis SE, Snyder M, et al.: Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution. Genome Research 2007,17(6):839–851.PubMedCrossRef 24. Noridge NA, Benson DR: Isolation and nitrogen-fixing activity of Frankia sp. strain
CpI1 vesicles. J Bacteriol 1986,166(1):301–305.PubMed 25. Kal AJ, van Zonneveld AJ, Benes V, van den Berg M, Koerkamp MG, Albermann K, Strack N, Ruijter JM, Richter A, Dujon B, et al.: Dynamics of Gene Expression click here Revealed by Comparison ZD1839 of Serial Analysis
of Gene Expression Transcript Profiles from Yeast Grown on Two Different Carbon Sources. Mol Biol Cell 1999,10(6):1859–1872.PubMed 26. Tisa LS, Ensign JC: Isolation and nitrogenase activity of vesicles from Frankia sp. strain EAN1pec. Journal of Bacteriology 1987,169(11):5054–5059.PubMed 27. Chin CS, Sorenson J, Harris JB, Robins WP, Charles RC, Jean-Charles RR, Bullard J, Webster DR, Kasarskis A, Peluso P, et al.: The origin of the Haitian cholera find more outbreak strain. N Engl J Med 2010,364(1):33–42.PubMedCrossRef 28. Mastronunzio JE: Genomic and Proteomic Analyses of Extracellular and Symbiosis-related Proteins in Frankia . Storrs, CT: University of Connecticut; 2009. 29. Twiss E, Coros AM, Tavakoli NP, Derbyshire KM: Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Molecular Microbiology 2005,57(6):1593–1607.PubMedCrossRef 30. Kristensen O, Ross B, Gajhede M: Structure of the PPX/GPPA Phosphatase from Aquifex aeolicus in Complex with the Alarmone ppGpp. Journal of Molecular Biology 2008,375(5):1469–1476.PubMedCrossRef 31. Chandler M, Fayet O: Translational frameshifting in the control of transposition in bacteria. Mol Microbiol 1993,7(4):497–503.PubMedCrossRef 32.